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Species Information

Observation Library

Plant Name Library

 

 

 

 

The field names below are not necessarily shown in the order that they appear in downloaded data files. Note that the data contained in Calflora is dynamic, and the database may also change structure periodically to adapt to new needs or processes. .

CALFLORA RECORD NUMBER

Example: 7245
Max size: 4

Unique ID number (integer) for Calflora record. These numbers are revised from time to time as circumscriptions or database maintenance dictate, please be advised not to use them as unique identifiers for taxa unless you are willing to perform maintenance on your data references. (links based on taxon names or ID codes (PLANTS, ADP or ITIS TSN) are probably more stable long-term.

CALFLORA TAXON NAME

Example: Abronia villosa S. Watson var. aurita (Abrams) Jepson
Max size: 255
(logistically longest: 138 for Pentagramma triangularis ssp. semipallida)

Full name of taxon, concatenated from the separate name component fields.

= "genus species author1 rank ssp_var author2"
Usage and spelling generally follows the Jepson Manual (Hickman 1993). Taxa given partial recognition in the Jepson Manual ( eg. 'plants with fr. < 3mm have been called var. minima') are also included, as are taxa recognized as distinct by the California Native Plant Society in the Inventory of Rare and Endangered Plants of California. We plan to include additional plants discovered or recognized since these publications, with criteria for inclusion currently under development. The list of names originally used in Calflora was provided by Fred Hrusa, California Department of Food and Agriculture. Differs from field taxon in that it includes author citation.

TAXON

Example: Abronia maritima
Max size: 128

Name of taxon, without authors. Useful for matching data between data sets.
concatenated from the separate name component fields:
= "genus species rank ssp_var"
Note: A taxon record does not always correspond to unique plant species or end-points of diversity.
i.e. Calflora contains separate records for Pentagramma triangularis, Pentagramma triangularis ssp.triangularis, and Pentagramma triangularis ssp. semipallida. If one were tracking biodiversity for an area, it would be wrong to double count both a parent taxon record "Pentagramma triangularis" and a child taxon record (i.e. Pentagramma triangularis ssp. semipallida" as two separate units of biodiversity. See additional discussion under the field description for parent_child.

GENUS

Example: Abronia
Max size: 17

Genus name of taxon.

SPECIES

Example: villosa
Max size: 21

Specific epithet of taxon. Note the uses of the word 'species' to refer to specific epithet is incorrect. Species refers to unique combinations of genus plus specific epithet.

AUTHOR 1

Example: S. Watson
Max size: 46

Species author of taxon, including parenthetical authorship.

RANK

Example: var.
Max size: 4

Infraspecific rank of taxon - "var." or "ssp."

SSP_VAR

Example: aurita
Max size: 19

Infraspecific epithet for taxon.

AUTHOR 2

Example: (Abrams) Jepson
Max size: 49

Infraspecific author of taxon, including parenthetical authorship.

FAMILY

Example: ASTERACEAE
Max size: 16

Family assignments follow the Jepson Manual (Hickman 1993).

CATEGORY

Example: 3Dicot
Max size: 13

Values include:

dicot
gymnosperm
monocot
pteridophyte
Designed to facilitate sorting of records in a phylogenetic order.

PARENT/CHILD TAG

Example: child
Max size: 10

This field tags the record as child, stepchild, or parent. A child is a fully recognized taxon that is included in another taxon within this database. A parent is the taxon within which the child is included. For example, Poa secunda
Poa secunda ssp. juncifoliais a child, and
is the parent of that child.
In a case like this, the information available in this database for the child will be more articulated than information available for the parent. On the other hand, information for the parent will in some ways be an aggregate of information for all of the children (subspecies and varieties). For instance, observation data reported for Poa secunda will include all observation data for Poa secunda ssp. juncifolia and Poa secunda ssp. secunda.

(A stepchild is a taxon not fully recognized as distinct in the Jepson Manual (Hickman 1993), but included here because it is recognized as distinct by the CNPS or considered possibly distinct by the Jepson Manual treatment author. A taxon from which the stepchild is doubtfully distinct is not identified as a parent.)

This tag is intended to facilitate species counts--including both a child and its parent results in an over-count of taxa.

PARENT RECORDNUM

Example: 345
Max size: 4

For children this is the calrecnum of the parent. For stepchildren, this is the calrecnum of the taxon from which the stepchild is possibly distinct.

PARENT NAME

Example: Trifolium andersonii
Max size: 42

For children this is the name (genus + species + rank + ssp_var) of the parent. For stepchildren, this is the name of the taxon from which the stepchild is possibly distinct.

TREATMENT NOTE

Example: optional in Jeps.
Max size: 17

Taxa not included or not fully recognized in the Jepson Manual (Hickman1993) have a note here explaining inclusion in Calflora.

'Optional in JM' refers to taxa mentioned as possibly distinct in the Jepson Manual.
'CNPS' refers to taxa recognized in the CNPS's Inventory of Rare and Endangered Vascular Plants of California.
'Post-JM' refers to taxa recognized as occurring in California since publication of the Jepson Manual, both new taxa and range extensions.

Values include:

optional in JM
CNPS, optional in JM
CNPS, post-JM
CNPS only
post-JM

NATIVE

Example: t
Max Size: 1

Each taxon is classed as t (true) for Native or f (false) for Non-Native (Introduced).

This data is based mainly on comparison of Fred Hrusa's XWALK designation and the Calflora 'introduced' designation, with individual review of conflicts and gaps.

LIFEFORM

Example: Perennial
Max size: 22

Each taxon is classed as one or more of the following:

Fern
Annual herb
Perennial herb
Biennial herb
Tree
Shrub
Vine
followed by adjectives in parentheses--e.g. Shrub (stem succulent)

aquatic
biennial
bulb
carnivorous
hemiparasitic
mosslike
rhizomatous
parasitic
mycoparasitic (previously "saprophitic")
stem succulent

Transcribed from Lum/Walker codes except that occurrences of 'not specified' were replaced with my interpretation of description in Munz or the Jepson Manual. For taxa included in the CNPS Inventory (1994), this field contains the lifeform descriptor used in that database (some infrequently-used adjectives have been dropped). For taxa not included in either Lum/Walker or the CNPS Inventory, this field contains transcriptions of data from the USDA PLANTS database. All Pteridophytes were reclassified as lifeform 'Fern' on 30 January 2001. All Ericaceae (Monotropoideae) previously marked 'saprophytic' reclassified as 'mycoparasitic' per communication with Garry Wallace (Wallace 1975) on 13 March 2001.

US DISTRIBUTION

Example: CA Endemic
Max size: 20

Describes distribution beyond California.

CA Endemic
CA+ extends only slightly beyond CA borders
wNAm beyond CA but confined to w. North America
NA/WW native here but range extends beyond N.Am.
Introd. introduced
For non-endemic taxa included in CNPS Inventory (1994), this field contains the non-California portion of the distribution entry from that database: standard 2-letter codes for U.S. states, also
BA Baja California
GU Isla Guadalupe, BA
SA South America
SO Sonora, Mexico.

COUNTY LIST (County Distributions)

Example: ALP ELD HUM

List of County regions where this species is, was, or may be present, based on data included in the Calflora Occurrence Database.

ALA Alameda
ALP Alpine
AMA Amador
BUT Butte
CAL Calaveras
CCA Contra Costa
COL Colusa
DNT Del Norte
ELD El Dorado
FRE Fresno
GLE Glenn
HUM Humboldt
IMP Imperial
INY Inyo
KNG Kings
KRN Kern
LAK Lake
LAS Lassen
LAX Los Angeles
MAD Madera
MEN Mendocino
MER Merced
MNO Mono
MNT Monterey
MOD Modoc
MPA Mariposa
MRN Marin
NAP Napa
NEV Nevada
ORA Orange
PLA Placer
PLU Plumas
RIV Riverside
SAC Sacramento
SBA Santa Barbara
SBD San Bernardino
SBT San Benito
SCL Santa Clara
SCR Santa Cruz
SDG San Diego
SFO San Francisco
SMT San Mateo
SHA Shasta
SIE Sierra
SIS Siskiyou
SJQ San Joaquin
SLO San Luis Obispo
SOL Solano
SON Sonoma
STA Stanislaus
SUT Sutter
TEH Tehama
TRI Trinity
TUL Tulare
TUO Tuolumne
VEN Ventura
YOL Yolo
YUB Yuba

PLANT COMMUNITIES

Example: m16m17m15 Medws
Max size: 42

List of two-digit codes each preceded by a 'm', no spaces (e.g. 'm13m27m29') Codes m01-m29 correspond to numbers used in Munz68 plant communities list (see Munz68 pp12-18 for descriptions)



    m01 Coastal Strand
    m02 Coastal Salt Marsh
    m03 Freshwater Marsh (note: this has been expanded to include all freshwater wetlands)
    m04 Northern Coastal Scrub
    m05 Coastal Sage Scrub
    m06 Sagebrush Scrub
    m07 Shadscale Scrub
    m08 Creosote Bush Scrub
    m09 Alkali Sink
    m10 North Coastal Coniferous Forest
    m11 Closed-cone Pine Forest
    m12 Redwood Forest
    m13 Douglas-Fir Forest
    m14 Yellow Pine Forest
    m15 Red Fir Forest
    m16 Lodgepole Forest
    m17 Subalpine Forest
    m18 Bristle-cone Pine Forest
    m19 Mixed Evergreen Forest
    m20 Northern Oak Woodland
    m21 Southern Oak Woodland
    m22 Foothill Woodland
    m23 Chaparral
    m24 Coastal Prairie
    m25 Valley Grassland
    m26 Alpine Fell-fields
    m27 Northern Juniper Woodland
    m28 Pinyon-Juniper Woodland
    m29 Joshua Tree Woodland
Other codes from Lum-Walker:
    m30 weed, species characteristic of disturbed places,
    m31 agricultural weed,
    m40 escaped cultivar,
    m41 introduced plant which is becoming naturalized,
    m42 agricultural plant,
    m50 many plant communities,
    m80 community not given, species associated with a peculiar habitat.
Code added April, 2008
    m45wetland-riparian
Plant community codes from CNPS INVENTORY (1994) were transcribed as follows, replacing Lum/Walker data for taxa included in both databases except as noted below:
CNPS Calflora
CoDNs m01

DeDns

DeDns

InDns

InDns

CBScr

m04 (Monterey Co. and N.)

CoScr

m04 " "

CBScr

m05 (San Luis Obispo Co. and S.)

CoScr

m05 " "

SDScr

m08

MDScr

m08

GBScr

m06

ChScr

m07

Chprl

m23

CoPrr

m24

VFGrs

m25

VnPls

VnPls

Medws

Medws

Plyas

m09

PbPln

PbPln

BgFns

BgFns

MshSw

MshSw

RpFrs

RpFrs

RpWld

RpWld

RpScr

RpScr

CmWld

JTWld

m20 (Coast ranges Napa Co. and N.)

CmWld

m21 (LAX Co. and S.)

CmWld

m22 (Santa Barbara to Trinity Co.)

PJWld

m27 (Alpine Co. and N.)

PJWld

m28 (Mono Co. and S.)

m29

BUFrs

m19 (and/or m22 following Lum/Walker)

NCFrs

m10 (and/or m12,m13,m26 following Lum/Walker)

CCFrs

m11

LCFrs

m14

UCFrs

m14 and m15 (also m16 following Lum/Walker)

SCFrs

m17 (and m16 following Lum/Walker)

AlpBr

m26

AlpDS

m26

LOWER ELEVATION LIMIT IN FEET

Example: 3500
Max size: 5

Richard Walker's compilation of elevation limits for Sierran taxa, based on Munz (1968) distribution descriptions, is the primary source of elevation data presented here. For taxa not included in Walker's compilation, we present elevation values from the Jepson Manual (1993), converted to feet. Converted values are rounded only to the nearest foot to minimize compounding of rounding errors if users convert all values to meters.

UPPER ELEVATION LIMIT IN FEET

Example: 5000
Max size: 5

same as above

ELEVATION SOURCE & ORIGINAL UNITS

Example: Munz (ft.)
Max size: 10

Source(s) of elevation data and unit of measure used in the original data.

CNPS RARITY CODE

Example: 2B
Max size: 3

Values of 'Rarity' code from CNPS Inventory database (CNPS 2008). Taxa not included in CNPS Inventory are designated 0 (not rare).

CALIFORNIA STATE LISTING STATUS

Max size: 64 char.

State listing codes from California Department of Fish and Game.
Date of listing included in parenthesis. Note field may include more than one listing status, values are separated by a semicolon.
Data refreshed: January 2001.

SE state-listed endangered
ST state-listed threatened
SR state-listed rare
SCE state candidate for listing, endangered
SCT state candidate for listing, threatened

FEDERAL LISTING STATUS

Max size: 64 char.

Federal listing codes from California Department of Fish and Game. Date of listing included in parenthesis.
Date refreshed: January 2001.

FE Federally listed endangered
FT Federally listed threatened
FPE Federally proposed endangered
FPT Federally proposed,threatened

HABITATS

Example: riparian
Max size: 57

Captures habitat descriptors from Lum/Walker and CNPS Inventory (1994) databases, includes the following keywords:

alluvial-fans
bogs/fens
brackish-marsh
canyons
cliffs
coastal
disturbed
dunes
edges
freshwater-marsh
lake-margin
lakes
marsh
meadows
openings
ridges
riparian
salt-marsh
seeps
slopes
streambanks
washes
Data is not available for all taxa.

CDFA WEED STATUS

Example: A
Max size: 16

Weed status rating codes from the California Department of Food and Agriculture, Plant Health and Pest Prevention Services.

Last updated in Calflora: October 2000 with classifications as of September 2000 (CDFA Weeds 2000).
Possible values:
A "An organism of know economic importance subject to state (or commissioner when acting as a state agent) enforced action involving: eradication, quarantine, containment, rejection, or other holding action."
B "An organism of known economic importance subject to: eradication, containment, control or other holding action at the discretion of the individual county agricultural commissioner." OR "An organism of know economic importance subject to state endorsed holding action and eradication only when found in a nursery."
C "An organism subject to no state enforced action outside of nurseries except to retard spread. At the discretion of the commissioner." OR "An organism subject to no state enforced action except to provide for pest cleanliness in nurseries."
D "No action. (Parasites, predators, and organisms of little or no economic importance)."
Q "An organism or disorder requiring temporary "A" action pending determination of a permanent rating. The organism is suspected to be of economic importance but its status is uncertain because of incomplete identification or inadequate information. In the case of an established infestation, at the discretion of the Assistant Director for Plant Industry, the Department will conduct surveys and will convene the Division Pest Study Team to determine a permanent rating."

FEDERAL NOXIOUS WEED STATUS

Example:
Max size: 34 Weed status rating codes from the United States Department of Agriculture Animal and Plant Health Inspection Service.

Last updated in Calflora: October 26, 2000 with ratings as of September 8, 2000 (USDA 2000)

Values:

not listed
y
y (author typo in their file)
y (author diff disregarded)

PLANTS CODE

Example: ABCO
Max size: 7

Code from USDA PLANTS for this name. May bridge different spellings between Calflora and PLANTS.

FWS WETLAND INDICATOR

Example: OBL
Max size: 8

The likelihood of a species occurring in wetlands versus non wetlands in California as determined by the U.S. Fish and Wildlife Service. Note that indicator categories do not refer to degrees of wetness. Some obligate wetland species occur in wetlands which are only temporarily or seasonally flooded. Data provided by Andrew Cruz and Buck Reed, U.S. Fish and Wildlife Service, National Wetlands Inventory, October 1997 ( further information).

Indicator categories:

OBL Obligate Wetland Occurs almost always (estimated probability 99%) under natural conditions in wetlands.
FACW Facultative Wetland Usually occurs in wetlands (estimated probability 67%-99%), but occasionally found in non wetlands.
FAC Facultative Equally likely to occur in wetlands or non wetlands (estimated probability 34%-66%).
FACU Facultative Upland Usually occurs in non wetlands (estimated probability 67%-99%), but occasionally found on wetlands (estimated probability 1%-33%).
UPL Obligate Upland Occurs in wetlands in another region, but occurs almost always (estimated probability 99%) under natural conditions in non wetlands in California. If a species does not occur in wetlands in any region, it is not on the National List.
NA No agreement The regional panel was not able to reach a unanimous decision on this species.
NI No indicator Insufficient information was available to determine an indicator status
An asterisk (*) following a regional Indicator identifies tentative assignments based on limited information from which to determine the indicator status.

A positive (+) or negative (-) sign is used with the Facultative Indicator categories to more specifically define the regional frequency of occurrence in wetlands. The positive sign indicates a frequency toward the higher end of the category (more frequently found in wetlands), and a negative sign indicates a frequency toward the lower end of the category (less frequently found in wetlands).

CALIFORNIA INVASIVE PLANT COUNCIL PLANT STATUS and URL

Example: 4:Ulmus%20pumila.pdf

Weed status code and URL from the California Invasive Plant Council.
In the example above, 4 is the status code.

OCCURRENCE DATABASE TOTAL COUNT

Example: 1236

The total count of records in the Calflora Occurrence Database that are unambiguously assignable to this taxon (including synonyms and included sub-taxa).

ITIS TAXONOMIC SERIAL NUMBER (TSN)

Example: 34123

The ITIS Taxonomic Serial Number for this taxon.

ONE COMMON NAME

Example: moutain dandelion

A single common name for the plant.

ACTIVE

Example: f

Is this record active? When there is a name change, and several nomenclature authorities agree on the new name, then Calflora will create a new record for the new name, and set active = 'f' on the old record.

SERPENTINE AFFINITY

Example: 2.6 (strong indicator)

The mean ultramafic affinity for this taxon, as per Safford et al 2005.

The numbers, on a scale from 1.0 to 6.25, are interpreted as follows:
>= 5.5 strict endemic 164 taxa with 95% of their occurrances on ultramafics
< 5.5,
>= 4.5
broad endemic 82 taxa with 85-94% of their occurrances on ultramafics
< 4.5,
>= 3.5
transition from broad endemic to
strong indicator
71 taxa with 75-84% of their occurrances on ultramafics
< 3.5,
>= 2.5
strong indicator 123 taxa with 65-74% of their occurrances on ultramafics
< 2.5,
>= 1.5
weak indicator 150 taxa with 55-64% of their occurrances on ultramafics
< 1.5,
>= 1.0
weak indicator / indifferent 79 taxa with 50-54% of their occurrances on ultramafics

 

Field List:
calrecnum
calname
taxon
genus
species
author1
rank
ssp_var
author2
family
parent_child
parent_rec
parent_name
treatment
category
lifeform
native
us_dist
plant_community
habitat_descriptors
countylist
lower_elev_ft
upper_elev_ft
elev_src_units
rarity
ca_status
fed_status
cdfa_weed_status
fed_nox_weed
wetland
plants_code
calipc
itis_tsn
occ_count
common
active
um_affinity

 

 
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